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(FP7-ICT-07)
PYTHIA:
Monolithically integrated interferometric biochiPs for label-free earlY deTection of Human dIseAses
more

Articles:
"PYTHIA Project Realizes First All-Si Truly Integrated Mach-Zehnder Biosensor Arrays for Label-free Detection Schemes", G. Jobst, I. Moser, R. Stoffer, M. Hoekman, R. Heideman, H. Leeuwis, K. Tukkiniemi, K. Tappura, S. Kamakari, G. Nounessis, S. Bhattacharya, J. Rysz, A. Budkowski, M. Kitsara, E. Makarona, P. Petrou, S. Kakabakos, K. Misiakos, I. Raptis, MST News 1/10 April 2010 pp 10-13 "Protein coverage on silicon surfaces modified with amino-organic films: A study by AFM and angle-resolved XPS", K. Awsiuk, A. Bernasik, M. Kitsara, A. Budkowski, J. Rysz, J. Haberko, P. Petrou, K. Beltsios, J. Raczkowska, Colloids and Surfaces B: Biointerfaces 80 (2010) 63-71

"Spectroscopic and microscopic examination of protein adsorption and blocking of non-specific binding to silicon surfaces modified with APTES and GOPS" K. Awsiuk, A. Psarouli, P. Petrou, A. Budkowski, S. Kakabakos, A. Bernasik, J. Rysz, I. Raptis, Procedia Engineering 25 (2011) 334-337

"Spectroscopic and microscopic characterization of biosensor surfaces with protein/amino-organosilane/silicon structure", K. Awsiuk, A. Bernasik, M. Kitsara, A. Budkowski, P. Petrou, S. Kakabakos, S. Prauzner-Bechcicki, J. Rysz, I. Raptis, Colloids and Surfaces B: Biointerfaces 90 (2012) 159-168

"Model immunoassay on silicon surfaces: vertical and lateral nanostructure vs. protein coverage", K. Awsiuk, A. Budkowski, P. Petrou, A. Bernasik, M. M. Marzec, S. Kakabakos, J. Rysz, I. Raptis Colloids and Surfaces B: Biointerfaces 103 (2013) 253–260

"Protein adsorption and covalent bonding to silicon nitride surfaces modified with organo-silanes: comparison using AFM, angle-resolved XPS and multivariate ToF-SIMS analysis", K. Awsiuk, A. Budkowski, A. Psarouli, P. Petrou, A. Bernasik, S. Kakabakos, J. Rysz, I. Raptis, Colloids and Surfaces B: Biointerfaces 110 (2013) 217-224

"All-silicon monolithic optoelectronic platform for multi-analyte biochemical sensing", K. Misiakos, E. Makarona, I. Raptis, A, Salapatas, A. Psarouli, S. Kakabakos, P. Petrou, M. Hoekman, R. Heideman, R. Stoffer, K. Tukkiniemi, M. Soppanen, G. Jobst, G. Nounessis, A. Budkowski, J. Rysz, Progress in Biomedical Optics and Imaging - Proceedings of SPIE 8765 (2013) art. no. 87650H


 

Surfaces & patterns for proteins & cells:  

Cooperator:
IFJ PAN Institute of Nuclear Physics Polish Academy of Science (Małgorzata Lekka)

Articles:
"Temperature-responsive peptide-mimetic coating based on poly(N-methacryloyl-L-leucine): Properties, protein adsorption and cell growth", J. Raczkowska, M. Ohar, Y. Stetsyshyn, J. Zemła, K. Awsiuk, J. Rysz, K. Fornal, A. Bernasik, H. Ohar, S. Fedorova, O. Shtapenko, S. Polovkovych, V. Novikov, A. Budkowski, Colloids and Surfaces B: Biointerfaces (2014) in press

"Plasma-Assisted Nanoscale Protein Patterning on Si Substrates via Colloidal Lithography" A. Malainou, K. Tsougeni, K. Ellinas, P. S. Petrou, V. Constantoudis, E. Sarantopoulou, K. Awsiuk, A. Bernasik ,A. Budkowski ,A. Markou ,I. Panagiotopoulos ,S. E. Kakabakos, E. Gogolides, and A. Tserepi The Journal of Physical Chemistry A 117 (2013), 13743–13751

"Temperature and pH dual-responsive POEGMA-based coatings for protein adsorption" Y. Stetsyshyn,K. Fornal, J. Raczkowska, J. Zemla, A. Kostruba, Halyna Ohar, Mariya Ohar, Volodymyr Donchak, Khrystyna Harhay,K. Awsiuk,J. Rysz, A. Bernasik, A. Budkowski, Journal of Colloid and Interface Science 411 (2013) 247–256

"Protein adsorption and covalent bonding to silicon nitride surfaces modified with organo-silanes: comparison using AFM, angle-resolved XPS and multivariate ToF-SIMS analysis", K. Awsiuk, A. Budkowski, A. Psarouli, P. Petrou, A. Bernasik, S. Kakabakos, J. Rysz, I. Raptis, Colloids and Surfaces B: Biointerfaces 110 (2013) 217-224

"Model immunoassay on silicon surfaces: vertical and lateral nanostructure vs. protein coverage", K. Awsiuk, A. Budkowski, P. Petrou, A. Bernasik, M. M. Marzec, S. Kakabakos, J. Rysz, I. Raptis Colloids and Surfaces B: Biointerfaces 103 (2013) 253–260

"Temperature and pH Dual-Responsive Coatings of Oligoperoxide-graft-Poly(N-isopropylacrylamide): Wettability, Morphology and Protein Adsorption" Y. Stetsyshyn, J. Zemla, O. Zolobko, K. Fornal, A. Budkowski, A. Kostruba, V. Donchak, K. Harhay, K. Awsiuk, J. Rysz, A. Bernasik, S. Voronov, Journal of Colloid and Interface Science 387(2012)95–105

"Proteins grouped into a variety of regular micro-patterns by substrate-guided domains of self-assembling poly(ethylene oxide)/ polystyrene blends", J. Zemła, J. Rysz, A. Budkowski, K. Awsiuk, Soft Matter 8 (2012) 5550-5560

"Implementation of NSOM to Biological Samples", S. Prauzner-Bechcicki, J. Wiltowska-Zuber, A. Budkowski, M. Lekka and J. Rysz, Acta Physica Polonica A 121 (2012) 533-538

"Spectroscopic and microscopic characterization of biosensor surfaces with protein/amino-organosilane/silicon structure", K. Awsiuk, A. Bernasik, M. Kitsara, A. Budkowski, P. Petrou, S. Kakabakos, S. Prauzner-Bechcicki, J. Rysz, I. Raptis, Colloids and Surfaces B: Biointerfaces 90 (2012) 159-168

"Reverse contrast and substructures in protein micro-patterns on 3D polymer surfaces", J. Zemła, A. Budkowski, J. Rysz, J. Raczkowska, M. Lekka, Colloids and Surfaces B: Biointerfaces 90 (2012) 144-151

"Spectroscopic and microscopic examination of protein adsorption and blocking of non-specific binding to silicon surfaces modified with APTES and GOPS" K. Awsiuk, A. Psarouli, P. Petrou, A. Budkowski, S. Kakabakos, A. Bernasik, J. Rysz, I. Raptis, Procedia Engineering 25 (2011) 334-337

"Polymer Blends Spin-cast into Films with Complementary Elements for Electronics and Biotechnology" A. Budkowski,J. Zemła, E. Moons, K. Awsiuk, J. Rysz, A. Bernasik, C.M. Björström-Svanström, M. Lekka, J. Jaczewska, Journal of Applied Polymer Science 125 (2012) 4275–4284

"Protein coverage on silicon surfaces modified with amino-organic films: A study by AFM and angle-resolved XPS", K. Awsiuk, A. Bernasik, M. Kitsara, A. Budkowski, J. Rysz, J. Haberko, P. Petrou, K. Beltsios, J. Raczkowska, Colloids and Surfaces B: 80 (2010) 63-71

"Formation, structure and wettability of fluorescent nanolayers of oligoperoxide europium complexes adsorbed to glass surface", Y. Stetsyshyn, A. Kostruba, J. Jaczewska, A. Zaichenko, N. Mitina, A. Budkowski, P. Kuzyk, A. Voloshinovskii, Thin Solid Films 518 (2010) 4318-4321

"Selective protein adsorption on polymer patterns formed by self-organization and soft lithography", J. Zemła, M. Lekka, J. Raczkowska, A. Bernasik, J. Rysz, A. Budkowski, Biomacromolecules 10 (2009) 2101-2109

"Modification of poly(ethylene terephtalate) surface by attached dextran macromolecules" , Y. Stetsyshyn, V. Donchak, K. Harhay, S. Voronov, J. Raczkowska, A. Budkowski, Polymer International 58 (2009) 1034-1040

"Structures in multi-component polymer films: their formation, observation and applications in electronics and biotechnology" , A. Budkowski, A. Bernasik, E. Moons, M. Lekka, J. Zemła, J. Jaczewska, J. Haberko, J. Raczkowska, J. Rysz, K. Awsiuk, Acta Physica Polonica A 115 (2009) 435-440

"Integral geometry analysis of fluorescence micrographs for quantitative relative comparison of protein adsorption onto polymer surfaces" J. Zemla, M. Lekka, J. Wiltowska-Zuber, A. Budkowski, J. Rysz, J. Raczkowska, Langmuir 24 (2008) 10253-10258

"Friction force microscopy as an alternative method to probe molecular interaction", M. Lekka, A. J. Kulik, S. Jeney, J. Raczkowska, J.Lekki, A. Budkowski, L.Forró, J. Chem. Phys. 123 (2005) 014702 (-1-7)

"Binding activity of patterned concanavalin A studied by atomic force microscopy", K. Lebed, G. Pyka-Fosciak, J. Raczkowska, M. Lekka and J. Styczen, J. Phys.: Cond. Matt. 17 (2005) S1447-S1458


 

Self-assembly for FET, LED, circuitry:  

Articles:

"Pattern replication in blends of semiconducting and insulating polymers casted by horizontal dipping" J. Rysz, M. Josiek, M. M. Marzec, E. Moons, Journal of Polymer Science, part B: Polymer Physics 51 (2013) 1419–1426

"Examination of polymer/metal interface modified by self-assembled monolayer by Kelvin probe force microscopy and secondary ion mass spectrometry", M.M. Marzec, A. Bernasik, J. Rysz, W. Łużny, A. Budkowski, Electrochimica Acta 104 (2013) 462–467

"Buried polymer/metal interfaces examined with Kelvin Probe Force Microscopy", M.M. Marzec, K. Awsiuk, A. Bernasik, J. Rysz, J. Haberko, W. Łużny, A. Budkowski, Thin Solid Films 531 (2013) 271-276

"Polymer Blends Spin-cast into Films with Complementary Elements for Electronics and Biotechnology" A. Budkowski,J. Zemła, E. Moons, K. Awsiuk, J. Rysz, A. Bernasik, C.M. Björström-Svanström, M. Lekka, J. Jaczewska, Journal of Applied Polymer Science 125 (2012) 4275–4284

"Humidity and wetting effects in spin-cast blends of insulating polymers and conducting polyaniline doped with DBSA" J. Haberko, A. Bernasik, W. Łuzny, M. Hasik, J. Raczkowska, J. Rysz, A. Budkowski, Journal of Applied Polymer Science 127 (2013) 2354–2361

"Dendrites and pillars in spin cast blends of polyaniline or its oligomeric analogue" J. Haberko, A. Bernasik, W. Łużny, J. Raczkowsk, J. Rysz, A. Budkowski, Synthetic Metals 160 (2010) 2459-2466

"Ordering domains of spin-cast blends of conjugated and dielectric polymers on surfaces patterned by soft- and photo-lithography" J. Jaczewska, A. Budkowski, A. Bernasik, I. Raptis, E. Moons, D. Goustouridis, J. Haberko, J. Rysz, Soft Matter 5 (2009) 234-241
illustration from this paper as a back cover of Volume 5, Issue 4

"Structures in multi-component polymer films: their formation, observation and applications in electronics and biotechnology" , A. Budkowski, A. Bernasik, E. Moons, M. Lekka, J. Zemła, J. Jaczewska, J. Haberko, J. Raczkowska, J. Rysz, K. Awsiuk, Acta Physica Polonica A 115 (2009) 435-440

"Polymer vs. Solvent Diagram of Film Structures Formed in Spin-Cast Poly(3-alkylthiophene) Blends", J. Jaczewska, A. Budkowski, A. Bernasik, E. Moons, J. Rysz, Macromolecules 41 (2008) 4802-4810

"Pattern Formation in Thin Polymer Films Containing Conducting Polyaniline", J. Haberko, J. Raczkowska, A. Bernasik, W. Łużny, J. Rysz, A. Budkowski, Macromol. Symp. 263 (2008) 47-52

"Conductivity of thin polymer films containing polyaniline", J. Haberko, J. Raczkowska, A. Bernasik, J. Rysz, M.Nocuń, J. Nizioł, W. Łużny,A. Budkowski, Molecular Crystals & Liquid Crystals 485 (2008) 796-803

"Pattern replication in polyaniline - polystyrene thin films", J. Haberko, J. Raczkowska, A. Bernasik, J. Rysz, A. Budkowski, W. Łużny, Synthetic Metals 157 (2007) Pages 935-939
illustration from this paper as a cover of Volume 157, Issues 22-23

"Swelling of poly(3-alkylthiophene) films exposed to solvent vapors and humidity: evaluation of solubility parameters", J Jaczewska, I Raptis, A Budkowski, , D Goustouridis, J Raczkowska, M Sanopoulou, E Pamuła, A Bernasik, J. Rysz, Synthetic Metals 157 (2007) 726-732

"Humidity and solvent effects in spin-coated polythiophene-polystyrene blends", J. Jaczewska, A. Budkowski, A. Bernasik, I. Raptis, J. Raczkowska, D. Goustouridis, J. Rysz , M. Sanopoulou, J. Appl. Polymer Sci. 105 (2007) 67-79

"The structure of thin films of polyaniline/polystyrene polymer blends studied by SIMS", J. Haberko, A. Bernasik, J.Włodarczyk - Miśkiewicz, W. Łużny, J. Raczkowska, J. Lekki, A. Budkowski, Fibers & Textiles in Eastern Europe, 13 (2005) 103-106

"Influence of humid atmosphere on phase seperation in polyaniline-polystyrene thin films", A. Bernasik, J. Haberko, J.Włodarczyk - Miśkiewicz, J. Raczkowska, W. Łużny, A. Budkowski, K. Kowalski, J. Rysz, Synthetic Metals 155 (2005) 516-522

"Lamellar structures formed in spin-cast blends of isolating and conducting polymers", A. Bernasik, J. Wlodarczyk-Miskiewicz, W. Luzny, K.Kowalski, J. Raczkowska, J. Rysz, A. Budkowski, Synthetic Metals 144 (2004) 253-257


 

Film structures for solar cells:  

Cooperator:
Karlstad University Karlstad University (Ellen Moons)

Articles:
"Polymer Blends Spin-cast into Films with Complementary Elements for Electronics and Biotechnology" A. Budkowski,J. Zemła, E. Moons, K. Awsiuk, J. Rysz, A. Bernasik, C.M. Björström-Svanström, M. Lekka, J. Jaczewska, Journal of Applied Polymer Science 125 (2012) 4275–4284

"Tuning the vertical phase separation in polyfluorene:fullerene blend films by polymer functionalisation" A. Anselmo, L. Lindgren, J. Rysz, A. Bernasik, A. Budkowski, M. Andersson, K. Svensson, J. Van Stam, E. Moons, Chemistry of Materials 23 (2011) 2295–2302

"Device Performance of APFO-3/PCBM Solar Cells with controlled morphology", C.M. Björström-Svanström, J. Rysz, A. Bernasik, A. Budkowski, F. Zhang, O. Inganäs, M.R. Andersson, K.O. Magnusson, J.J. Benson-Smith, J. Nelson, E. Moons, Advanced Materials 21 (2009) 4398–4403

"Morphology and phase segregation of spin-casted films of polyfluorene/PCBM blends", S. Nilsson, A.Bernasik, A. Budkowski, E. Moons, Macromolecules 40 (2007) 8291-8301

"Vertical phase separation in spin-coated films of a low bandgap polyfluorene/PCBM blends - effects of specific substrate interaction", C.M. Björström, S. Nilsson, A. Bernasik, A. Budkowski, K.O. Magnusson, E. Moons, Appl. Surf. Sci. 253 (2007) 3906-3912

"Influence of solvents and substrates on the morphology and the performance of low-bandgap polyfluorene: PCBM photovoltaic devices", C.M. Björström, S. Nilsson, K.O. Magnusson, E. Moons, A. Bernasik, J. Rysz, A. Budkowski, F. Zhang, O. Inganäs, M.R. Andersson, Proc. SPIE 6192 (2006) 61921X (9 pages)

"Multilayer formation in spin-coated thin film of low-bandgap polyfluorene: PCBM blends", C. M. Björström, A. Bernasik, J. Rysz, A. Budkowski, S. Nilsson, M. Svensson, M. R. Andersson, K. O. Magnusson, E. Moons, J. Phys.: Conden. Matter 17 (2005) L529-L534


 

Novel techniques for self-organization :  

Articles:

"Breath Figures in Polymer and Polymer Blend Films Spin Coated in Dry and Humid Ambience", W. Madej, A. Budkowski, J. Raczkowska, J. Rysz, Langmuir 24 (2008) 3517-3524

"Structure evolution in layers of polymer blend nanoparticles", J. Raczkowska, R. Montenegro, A. Budkowski, K. Landfester, A. Bernasik, J. Rysz, P. Czuba, Langmuir 23 (2007) 7235 -7240

"Compositional mismatch between chemical patterns on a substrate and polymer blends yielding spin-cast films with sub-pattern periodicity", J. Raczkowska, A. Bernasik, A. Budkowski, J. Rysz, B. Gao, M. Lieberman, Macromolecules 40 (2007) 2210-2125

"Pattern guided structure formation in polymer films of asymmetric blends", J. Raczkowska, A. Bernasik, A. Budkowski, P. Cyganik, J. Rysz I. Raptis, P. Czuba, Surface Science 600 (2006) 1004-1011

"Composition Effects in Polymer Blends Spin-Cast on Patterned Substrates", J. Raczkowska, P. Cyganik, A. Budkowski, A. Bernasik, J. Rysz I. Raptis, P. Czuba, and K. Kowalski;, Macromolecules 38 (2005) 8486-8493

"Pattern replication examined with integral geometry approach: application to ion milling of polymer blend films ", J. Raczkowska, A. Bernasik, A. Budkowski, J.Rysz, K. Kowalski, M. Lekka, P. Czuba, L. Lekki, Thin Solid Films , 476 (2005) 358-365

"Evolution of 3D structures in phase separating polymer blend film confined by symmetric flat walls", A. Bernasik, J. Rysz, A. Budkowski, R. Brenn, K. Kowalski, J. Camra, J. Jedlinski, Europ. Phys. J. E - Soft Matter. 12 (2003) 211-214

"Substructure formation during pattern transposition from substrate into polymer blend film", P. Cyganik, A. Budkowski, U. Steiner, J. Rysz, A. Bernasik, S. Walheim, Z. Postawa, J. Raczkowska, Europhys. Lett. 62 (2003) 855-861

"Substrate-determined shape of free surface profiles in spin-cast polymer blend films" , A. Budkowski, A. Bernasik, P. Cyganik, J. Raczkowska, B. Penc, B. Bergues, K. Kowalski, J. Rysz, J. Janik, Macromolecules 36 (2003) 4060 - 4067

"Surface patterns in solvent-cast polymer blend films analyzed with integral-geometry approach" , J. Raczkowska, J. Rysz, A. Budkowski, J. Lekki, M. Lekka, A. Bernasik, K. Kowalski, P. Czuba, Macromolecules 36 (2003) 2419-2427

"Hierarchic structure formation in binary and ternary polymer blends" , M. Sprenger, S. Walheim, A. Budkowski, U. Steiner, Interface Science 11 (2003) 225-235

"AFM/ LFM studies of a ternary polymer blend cast on substrates covered by self-assembled monolayer" P. Cyganik, A. Budkowski, J. Raczkowska and Z. Postawa, Surface Science 507-510 (2002) 700-706

"Three-dimensional information on the phase domain structure of thin films of polymer blends revealed by secondary ion mass spectrometry" A. Bernasik, J. Rysz, A. Budkowski, K. Kowalski, J. Camra, J. Jedlinski, Macromol. Rapid Commun. 22 (2001) 829-834

"Hydrodynamic-flow-driven phase evolution in a polymer blend modified by diblock copolymers" J.Rysz, H.Ermer, A.Budkowski, A. Bernasik, J. Lekki, G. Juengst, R. Brenn, K. Kowalski, J. Camra, M. Lekka and J. Jedlinski, Europ. Phys. J. E - Soft Matter 5 (2001) 207-219

"Phase decomposition in polymer blend film cast on substrates patterned by self-assembled monolayers" P. Cyganik, A. Bernasik, A. Budkowski, B. Bergues, K. Kowalski, J. Rysz, J. Lekki, M. Lekka and Z. Postawa, Vacuum 63 (2001) 307-313

"Wetting transition in a binary polymer blend" J.Rysz, A.Budkowski, A.Bernasik, J.Klein, K.Kowalski, J.Jedlinski and L.J.Fetters, Europhys. Lett. 50 (2000) 35-40

"Surface enrichment- depletion duality in a binary polymer blend" A.Budkowski, J.Rysz, F.Scheffold and J.Klein, Europhys. Lett. 43 (1998) 404-409

"Complete Wetting from Polymer Mixtures" U.Steiner, J.Klein, E.Eiser, A.Budkowski and J.Fetters, Science 258 (1992) 1126-1129


 

  Previous projects:
Wetting phase transition

Tuned stratification & phase evolution

2 & 3-D imaging

Solvent-casting effects

Pattern replication

Image analysis

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